The PRINCOMP Procedure

(View the complete code for this example.)

This example analyzes mean daily temperatures of selected US cities in January and July. Both the raw data and the principal components are plotted to illustrate that principal components are orthogonal rotations of the original variables.

The following statements create the Temperature data set:

data Temperature;
   length CityId $ 2;
   title 'Mean Temperature in January and July for Selected Cities';
   input City $ 1-15 January July;
   CityId = substr(City,1,2);
   datalines;
Mobile          51.2 81.6
Phoenix         51.2 91.2
Little Rock     39.5 81.4
Sacramento      45.1 75.2
Denver          29.9 73.0

   ... more lines ...   

Cheyenne        26.6 69.1
;

The following statements plot the Temperature data set. The variable Cityid instead of City is used as a data label in the scatter plot to avoid label collisions.

title 'Mean Temperature in January and July for Selected Cities';
proc sgplot data=Temperature;
   scatter x=July y=January / datalabel=CityId;
run;

The results are displayed in Output 92.1.1, which shows a scatter plot of the 64 pairs of data points in which July temperatures are plotted against January temperatures.

Output 92.1.1: Plot of Raw Data

The following step requests a principal component analysis of the Temperature data set:

ods graphics on;

title 'Mean Temperature in January and July for Selected Cities';
proc princomp data=Temperature cov plots=score(ellipse);
   var July January;
   id CityId;
run;

Output 92.1.2 displays the PROC PRINCOMP output. The standard deviation of January (11.712) is higher than the standard deviation of July (5.128). The COV option in the PROC PRINCOMP statement requests that the principal components be computed from the covariance matrix. The total variance is 163.474. The first principal component accounts for about 94% of the total variance, and the second principal component accounts for only about 6%. The eigenvalues sum to the total variance.

Note that January receives a higher loading on Prin1 because it has a higher standard deviation than July. Also note that the PRINCOMP procedure calculates the scores by using the centered variables rather than the standardized variables.

The PLOTS=SCORE option in the PROC PRINCOMP statement requests a plot of the second principal component against the first principal component, as shown in Output 92.1.3. It is clear from this plot that the principal components are orthogonal rotations of the original variables and that the first principal component has a larger variance than the second principal component. In fact, the first component has a larger variance than either of the original variables, July and January. The ellipse indicates that Miami, Phoenix, and Portland are possible outliers.

Output 92.1.3: Plot of Component 2 by Component 1